Examples

As part of our GitHub distribution we provide some example projects along with their workflows in the examples/ folder. These projects are also included in the $HOME/agc/examples folder that is created when you install Amazon Genomics CLI.

The demo-project shows some basic concepts and tests, while the gatk-best-practices-project provides some real world genetics workflows. We also include a demo-nextflow project to show some basic examples of running Nextflow workflows in Amazon Genomics CLI.

See also the Getting Started and Tutorials sections.