Workflow Engines

Supported Workflow Engines

The following pages provide details on the workflow engines that are currently supported by Amazon Genomics CLI.


Filesystems

Workflow Filesystems

miniwdl

Details on the miniwdl engine deployed by Amazon Genomics CLI

Toil

Details on the Toil engine (CWL mode) deployed by Amazon Genomics CLI

Cromwell

Details on the Cromwell engine deployed by Amazon Genomics CLI

Nextflow

Details on the Nextflow engine deployed by Amazon Genomics CLI

Snakemake

Details on the Snakemake engine deployed by Amazon Genomics CLI